tRFUniverse - Dimensionality Reduction

Select datasets

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Select metadata (optional)

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Select the dimensionality reduction algorithm

PCA

Select covariates for batch correction (optional)

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Filter samples by subtype (optional)

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Filter samples by type (optional)

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Enable expression scaling?

Enable fragments filtering?

Keep the top-N fragments by filtering measure

Select the type of expression values

Mean Absolute Deviation (MAD)